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TAC Note: New project: Correlizer

Philippart

Philippart

Golden Member
Correlizer

Research area:
Biology/Medicine

Developers:
Biophysical Genomics Group, Dept. Cell Biology, Erasmus Medical Center and Erasmus Grid Office, Rotterdam, The Netherlands
Genome Organization & Function Group, BioQuant Center/German Cancer Research Center, Heidelberg, Germany
Hosted by the University of Heidelberg, Germany

Website:
http://svahesrv2.bioquant.uni-heidelberg.de/correlizer/

Description:
They have a very long description and background section on the website, here's a kind of summary
[...]The sequential organization of genomes, i.e. the relations between distant base pairs and regions within sequences, and its connection to the three-dimensional architectural organization of genomes is still a largely unresolved problem.[...]
Click to expand...

[...]Here we ask for your support by donating your computer resources for Correlizer, to reveal these mysteries further and thus lay the foundation for better diagnosis and treatment of diseases.[...]
Click to expand...

happy crunching

Edit: I added the second quotation
 
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Thanks, Tom :thumbsup:

I had to wait until I reached 1 million on NFS. Now I am aboard!
 
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Correlizer must be desperate! I hit the save profile button and immediately became the User of the Day! TA, DAH!
 
biodoc said:
:biggrin:

RT, is this project linux friendly?
Click to expand...

Yes, if you don't select the testing option. Mine all got "out of time" errors at the five minute mark. It might be fixed by now.

The regular return 11 points per 20 minute processing.

I don't know what the testing WUs return because I had 70 cancel on me.

I will be moving a three-core over some time today.

Stats.Free-DC updates once a day just after midnight
 
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Rudy Toody said:
Yes, if you don't select the testing option. Mine all got "out of time" errors at the five minute mark. It might be fixed by now.

The regular return 11 points per 20 minute processing.

I don't know what the testing WUs return because I had 70 cancel on me.

I will be moving a three-core over some time today.
Click to expand...

Thanks! I'll give beta testing a try to see if they've got a fix.
 
I hope they fix the check pointing soon. I get error wu's everything I shutdown or reboot.
Not a lot of lost cpu time, but still annoying.
 
Is anyone else running the beat app? I have an interesting discovery, but I'd like a second look at it. I'm running windows7x64, and any time my wingman is running linux, the WU gets marked as inconclusive. If both have windows I have no problem. If the third WU goes to a linux system, I get marked as error, if the third goes to a windows system I get validated.

There seems to be a discrepancy between the windows and linux beta apps which doesnt allow similar results.
 
waffleironhead said:
Is anyone else running the beat app? I have an interesting discovery, but I'd like a second look at it. I'm running windows7x64, and any time my wingman is running linux, the WU gets marked as inconclusive. If both have windows I have no problem. If the third WU goes to a linux system, I get marked as error, if the third goes to a windows system I get validated.

There seems to be a discrepancy between the windows and linux beta apps which doesnt allow similar results.
Click to expand...

You are correct! Most of my wingmen ran Windows, so I lost out on a bunch. I turned off the beta switch for now. Will try it again after the PrimeGrid race.
 
Rudy Toody said:
You are correct! Most of my wingmen ran Windows, so I lost out on a bunch. I turned off the beta switch for now. Will try it again after the PrimeGrid race.
Click to expand...

Good to know I'm not the only one. I posted to the message board. Its gotten 20+ hits but no reply so far.
 
TeAm is now 10th. Biodoc and RT are 26th and 27th in project and 9th and 10th in USA.

If we could recruit a heavy hitter (someone whose farm can produce over 50K per day), that heavy hitter would have an excellent chance to reach 1 million first and get his name in the record books. (That's a hint!) The current leader produces 28K per day and has 560K.
 
I want to contribute but still no internet access. They say it could be a week. I get phone catv and internet from a single provider. They say the problem is in our house. I've got 2 neighbors also down and branches, limbs hanging off the cables on the pole across the street. Looking for a new provider. Sorry about spelling grammar, posting from cell phone.

Edit: all 3 services are down and the problem is in the house?? 🙂
 
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biodoc said:
I want to contribute but still no internet access. They say it could be a week. I get phone catv and internet from a single provider. They say the problem is in our house. I've got 2 neighbors also down and branches, limbs hanging off the cables on the pole across the street. Looking for a new provider. Sorry about spelling grammar, posting from cell phone.

Edit: all 3 services are down and the problem is in the house?? 🙂
Click to expand...

Did you check to see if the tin can fell off of their string?

But seriously folks,

1) check all cable connections for tightness--a little bit more than finger tight.
2) if you use a splitter, try removing it to see if that helps. (I've had a splitter fail once--took days to find.)


A couple of years ago, Comcast told me the same thing. I made an agreement with them--the technician would check the line at the wall in my apartment. If the signal was good, I would pay for the visit. It turned out they had a corroded connection in the telephone closet.

An angle to use when talking to them--always emphasize the loss of the phone. There are federal laws about the reliability of phone service that makes cable companies nervous.
 
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Rudy Toody said:
Did you check to see if the tin can fell off of their string?

But seriously folks,

1) check all cable connections for tightness--a little bit more than finger tight.
2) if you use a splitter, try removing it to see if that helps. (I've had a splitter fail once--took days to find.)


A couple of years ago, Comcast told me the same thing. I made an agreement with them--the technician would check the line at the wall in my apartment. If the signal was good, I would pay for the visit. It turned out they had a corroded connection in the telephone closet.

An angle to use when talking to them--always emphasize the loss of the phone. There are federal laws about the reliability of phone service that makes cable companies nervous.
Click to expand...

:biggrin::biggrin:

All 3 services came back up sometime last night! 🙂

Running correlizer again!
 
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