Uh huh, and the study that shows the negative health effects from this milk is... where?
BTW, try not to fool yourself: the overwhelming majority of the food you eat in the US is produced in very similar factory-like conditions. Do you eat 100% whole/raw/unprocessed foods? Or do you occasionally buy something boxed, pre-packaged or canned? Do you buy everything from small, local farms that you know follow sustainable farming practices? And no, organic food doesn't necessarily cut it. Do you eat at restaurants? Do you eat deli meats and cheeses? Do you know where your fish comes from? Have you counted the ingredients in your bread?
The state of our entire food system is pretty poor. It sucks and it's quite difficult to do much about it, but randomly picking out milk as being worse than anything else you're eating doesn't make sense. In fact, since GOMAD is a short term way to add some serious weight - I doubt anyone would ever need to do it for more than 6 months - you are very unlikely to see any negative health effects.
Of course, if you're that worried about it, you could follow the advice of that article and buy raw milk...