I think that its more that they just don't do their reviews in a professional manner that is repeatable by others, or leave out important caveats about their testing setup.
Tom's data might be interesting but isn't as informative, perhaps, as testing done elsewhere is.
Absolutely. They're not biased they just tend to be a bit clueless when it comes to gaming benchmarks and have turned their site into an ad whore where "news articles" look like documents straight from the mouths of PR folk at hardware companies =P
They would recommend AMD CPUs all the time for the low end of the spectrum and Intel at the high end, what's changed now is that at stock settings no AMD CPU is really competitive in that respect anymore. You've got to invest in both cooling and OC it heavily to see the performance you should be getting at stock. That's not Tom's fault, that's just reality.
Microcenter shouldn't be the be-all end-all when it comes to suggesting builds or proving a point when it comes to value. Microcenter is the exception, thus bringing to light any superduperawesomeamazing deals from MC isn't a valid point. Most people don't live anywhere near a Microcenter and for some who do, like me, I still wouldn't go there. If you want to make a point with respect to value then you should be quoting NE or Amazon or MSRP.