you need a line out converter. it splices into the factory harness, either to the front or rear speakers, whichever channel you want your subs to be on, and adds two rca outputs. i've seen two different versions, one for about $25 the other for about $50.. sound quality and the way it hooks up to the exsisting speaker wire are the only things that are different.
as for running cables, there should be a hole in the firewall, possibly were the spedo meter cable goes through, just cut a little hole in the rubber grommet there and stuff the power wire through. pull up the kick panels on the driver side, stuff the cable under the edge of the carpet, use some tape to hold it down in a couple of spots.. run it all the way back to the back seat, assuming it has a fold down back seat to the trunk just run it behind the seat and into the trunk. repeat on the other side of the car (passenger) with rca and remote. and it should be pretty easy to find a peice of metal to hook a ground to in the trunk, just make sure that if there is any paint on the surface to sand it off (ensuring a good connection between the amp and it's ground).