I read though all of the replies to this thread so far, and I might be able to add some insight.
As far as I know, all of the Maxtor PCI IDE controllers have been relabled Promise Ultra-family cards. I myself own and use a Promise Ultra66 card.
Here's where everything gets really interesting. The Promise Ultra66, Ultra100, and most likely the FastTrack66 and FastTrack100 as well, have reported data-corruption problems under Windows 2000, and some reports under Linux as well. Something about Win9x apparently causes the problem to not manifest itself. (Linux and W2K "push" the hardware much more than Win9x does.)
However, the newest (2.0.29) Promise Ultra family drivers for W2K seem to fix (workaround) this data-corruption issue, by throttling or serializing the transfers between the two IDE channels on the card.
I used to have two drives hooked up, an IBM 30GB 7200 RPM 75GXP as Primary Master (ATA66), and an IBM 13.5GB 7200 RPM 14GXP as Secondary Master (ATA33). With the older drivers (and in Win9x), running Adaptec SCSIBench from EZ-SCSI 5.01 and the latest Adaptec ASPI layer, one could clearly see the performance difference between the two drives. The 14GXP can do 12.9MB/s read, and the 75GXP can do 37MB/s read.
However, with the newest (2.0.29) drivers in W2K, if I have either drive reading by itself (same sector transfers - basically testing the transfer rate of the interface and read cache buffers), then it benchmarks at it's appropriate bandwidth. If I enable *both* drives reading at once, the faster one gets throttled back to the speed of the slower one, cutting my 37MB/s read transfer rate down to 12.9MB/s for my 75GXP.
This is really annoying, but I'm sure that it is necessary to avoid the data-corruption problem that has plagued this controller card.
Perhaps this slowdown is the issue that you are seeing? What version of the drivers are you running?
PS. The identification of the Promise controller card to the OS as a SCSI controller, and subsequently each IDE drive showing up as a "SCSI" device, is normal. The Promise controllers only run with DMA enabled, so you don't have to worry that DMA is disabled. You do need to make sure that you are using an UltraDMA IDE cable though, the one with 80 conductors.