if you have a low ug gpa and then do not have an extemely high (3.85) ms gpa or above and extemely outstanding recs, statement and GREs then most strong ph.d. programs will not likely be interested, or will not offer you funsing/research assistance.
I've always heard that they would look at the MS gpa more than the BS gpa (in engineering). You could include a letter in your application explaining your low undergrad gpa (if it is low), upward swing in undergrad gpa, etc.
I guess it kind of makes sense too since a BS in EE is a little bit of several fields. An MS is a concentration in one field. And a PhD is a concentration of one factor of one field (I think?).
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