I just cleaned an XP system (laptop) with the previous version of
DOS/Alureon.A rootkit/trojan that infects the MBR. Nothing would clean it, not MSSE, Norton, or MBAM. I deleted all partitions from inside Disk Management, created a new partition and formatted it (using the long format in Windows Vista) - twice. I booted using a Vista install CD and tried deleting the partitions, recreating then formatting. Hell, I even put the disk into an external enclosure so that the MBR wouldn't get loaded/hooked during boot, and tried everything again. It was still being detected!
I finally got rid of it by creating a bootable CD and running Hitachi's hard disk diagnostic utility that contains a full zero write and MBR erase feature. Nasty shit.