Interesting. So here's a couple of things to try.
One, let them install the managed unit and see what they come up with.
Two, use a different ethernet card--I know, sounds crazy--but I've seen more crazy before as a bad nic is really hard to really figure out some times. A usb nic would be fine for this test.
Three, use pathping and see what is going on at each hop--if there's a lot of retransmits/packet loss, you should see them at a particular hop for sure.
Four, run the freeola line test, not the speedtest, but the line test. It's helped me identify pack loss before.
Five, sign up to thinkbroadband's free monitor service. Sure, it's from the UK, but I've found that it's nearly 100% accurate in finding packet loss and other weirdness that you wouldn't ordinarily see. I actually use it to monitor all 4 of my isp accounts:
So I had a similar issue that took over a year to resolve when our entire apartment community's service would have up to 10% packet loss after 6pm. After sharing packet loss data and freeola line test data with the isp, the isp discovered that their backbone provider was cutting their service after hours. They fired their backbone provider and upped speeds across the board, but I never got a credit or refund for the service I paid for that was useless to me after 6pm. Hopefully, your issue will be resolved quicker than mine.