Linux isn't plug-n-play... It has some very limited control over the stuff like IRQ's, but not a whole lot. I realy haven't figured it out to much myself. Generally it expects your BIOS to set all that stuff up properly, which is what it's job is.... Unless you have some ISA slots you shouldn't have to mess around with that sort of thing.
Umm... some usefull information is located in the /proc/interrupts files. That will show your IRQ's and what they are assigned to. Maybe if you post it somebody may have a revelation.
Other thing to try is by messing around with your bios.
Try setting it to PnP-aware OS to "off" or "on".. basicly the oppisite of what you have now. And try that.
You can try setting the "VGA dedicated interrupt" on or off.. or something like that.
All this stuff is kinda of a mystery, each Motherboard Manufafture doesn't a bit differently. AH THE JOYS OF THE x86 PLATFORM!!! YA!
You can try disabling the sound card if you don't use it or any other on-board device you don't use like the com ports.. that will free a couple interrrupts up. Even on some motherboards it will think it has a on-board device that may not exist in your revision.
But usually if it seems like a interrupt problem it probably isn't.... Linux problems like this are relatively rare so I am not suprised that your having a hard time finding info.
Don't forget that /proc/interrupts file.