Without beating about the bush, IMHO AMD tried to have their cake and eat it. There is no question that the reference R9 290/X cooler is not good enough to keep the GPU cool and quiet at the same time. What we the consumer ended up with is an excellent GPU with a poor cooler. We can choose between two modes.
Quiet mode: Acceptable noise level with some very bad throttling. This also seems to be the mode where the most variance will crop up.
Or
Uber mode: Little to no throttling but at the expense of a very loud fan profile.
We can't have both at the same time with the current reference cooler. There is essentially nothing wrong with how R9 290/X boost/clock control works apart from the reference cooler. I think the reference cooler is just not up to the job and once even semi decent custom cooled versions are released there will be no need for a quiet mode.
Quiet mode: Acceptable noise level with some very bad throttling. This also seems to be the mode where the most variance will crop up.
Or
Uber mode: Little to no throttling but at the expense of a very loud fan profile.
We can't have both at the same time with the current reference cooler. There is essentially nothing wrong with how R9 290/X boost/clock control works apart from the reference cooler. I think the reference cooler is just not up to the job and once even semi decent custom cooled versions are released there will be no need for a quiet mode.