There are a few issues with your requirements that limit which OEMs can provide your systems. The first is the fact that you are asking for single dual-core CPUs. As far as I know only Sun is selling these in a 1u form factor. Further complicating this same issue is the fact that there are no 1u socket 939 motherboards out there (that I know of). The second issue with your order is its volume. 100 servers is kind of hard to fulfill for a lot of smaller OEMs, 1000 is close to impossible.
You could try giving someone, like Monarch (they seem to have pretty good ties with AMD), a call to ask them if there's any way for them to hunt down the parts to make you a server that fits your need. If you're buying from an integrator such as this I'd try to get Opteron 175s over X2 4400s simply because they're the same price but AMD "validates" the opteron for server use (whatever this validation is). If one of these OEMs offers to charge you around $300-$400 for labor I think that's a pretty good deal. This whole process would take a long time, though, since they'd have secure the parts, create a test setup first and troubleshoot any possible issues and finally start "mass-production."
Sun, on the other hand, already has the parts (or can secure them rather easily... then again, 1000 pieces of a just-released setup could be slightly tricky if you require immediate deployment), has already tested the system extensively and (an important point, in my opinion) can offer you an IPMI service processor and preconfigured management nodes and software (if you buy the whole rack). Like I said, you can try giving them (and other OEMs) a call in order to get quotes, estimated deployment dates, etc. A smaller OEM would sell you 1000 individual servers, a large OEM can sell you a preconfigured solution. Dont be scared by Sun's $2300 price per server. You can drop that to around $2000 just by getting rid of 1 gig of ram and the DVD rom, they would not mind custom-building for a large order. And that's without getting a volume discount, which you undoubtedly can get, especially if they "find out" that you're interested in HP/Dell servers and have been talking to them as well. The biggest thing when dealing with ANY OEM is that you cant let their salesforce convince you that they're doing you any favors. You are the one purchasing so dont let them pressure you into anything, they're not doing you any favors--they want your cash. hell, you can ask them to send you a server to test out if you want to, to see if it fits your needs/expectations.
Hopefully you can get a 20-30% discount on your stuff from whomever you buy from, just 'cause of the volume.
EDIT: Sun's prices on these new servers are actually pretty low (or rather, decent), considering that Dell sells a Pentium D 1u rack server for around $3k.