Actually, if you put the flasher and the .bin file on the root of the hard drive, then boot to command prompt only, using F8 at boot up, you can run it from the C drive.
Just enter the flash program XXXXXXXX.EXE, or what ever, then when it prompts you for the program to flash, you must also enter the path, ie. C:\xxxxxxxxx.bin or whatever the file name is. Follow the rest and flash away. Don't disturb anything during the flash program. Once done, delete those files from the root of the drive.