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<< Hate to say it but..... from here it sounds like the transmission . Does it go into gear quickly ? or does it lag when you shift it ? >>
When it's the tranny, you know it. The tranny in my car was perfect until over winter break when I was driving down the highway and my whole car shuddered violently and the tranny went out of gear. Drove 5 miles home in 3rd gear because I had lost overdrive (4th) to discover that reverse was gone too as I was parking it at the mechanic's. I just sat and watched as the tranny absorbed a couple grand for the re-build. But the tranny was absolutely fine right up to the second it let go. Tranny problems are generally pretty obvious.
ZV
EDIT: Damn cheap Honda trannys. 205,000 miles and the things just die for no reason. About the car not being smooth when you are accelerating; very, very, very few 4-cyl cars are smooth when accelerating hard (3/4 to full throttle), and the slight delay you describe sounds simply like the engine bleeding off the inertia of a hard revving. Honestly other than maybe adjusting the idle I don't think you have anything seriously wrong with the car at all. >>
Well, I've tried adjusting the idle RPM, it doesn't work. I am trying to be resonable here, ok? I know 4 cyclinder doesn't run as smooth as some V6 or V8...but come on! my friend's 4 cyclinder doesn't run like mine either...and my car wasn't like this when it was new, it only runs like this after an incident....I don't know if anyone of you want to know what happen...if so, just ask me...I will post again.