Did the act of flashing the BIOS, reset any overclocks that you might have had applied?
I know that on my R5 1600 CPUs, in my ASRock AB350M Pro4 mobos, there was a weird issue, where the CPU temp slowly climbs, like 5-7C, then drops down, then climbs again., etc. Maybe they fixed what was causing that?
only things I can think of is slightly adjusted voltages and/or a different CPU cooling profile, otherwise the temperatures should basically be the same.