I see the pin your talking about in the picture and Id say it is fine since that's not the contact point. that's just excess from the board.
I still can't "see" it, so I was puzzled. What I see is a long row of pins at solder joints. And if it isn't the pin that fits a proprietary plug, I wouldn't mess with it unless it's touching another pin with prospects for an electrical short. In such a case, there's also the possibility you could cause a solder-joint to crack by fiddling with it. So -- yeah -- leave it alone . . Hook it up and see if it works like it's supposed to. If it doesn't work -- send it back; if it does work -- well -- experience will temper your imagination in the future.
EDIT--ADDENDUM: OK . . . I didn't go back through the posts, but it looks as though Bubbles got an NZXT "Sentry." These have been around for awhile. I haven't anything bad to say about them. Looking at the "stuff" in the package at the Egg, I don't see any thermal sensors -- or if I do -- it looks like a single one. This would have worked like a unit I bought some years back -- maybe a CM product. With the latter, no "touch-screen" but fancy-looking buttons and a blue temperature and fan-speed LCD. It had a single thermal sensor, if I recollect.
If the NZXT has a single analog sensor, you'll want to make it count. In those days, with a 533-FSB Pentium Northwood CPU, I didn't bother trying to install the sensor between the CPU and the mobo -- which I'd described here, or on a similar thread that's still active.
Here's the deal. I was ready to blow this NZXT off as techno-bling-candy -- a front-panel controller that's still manually controlled. Well -- I could've got some mileage out of my old CM front-panel, if I'd just taken the time (and risk) of sticking that single sensor under the CPU.
Think about it. Used to be that HDDs would get warm or hot; other devices or hotspots in the case . . also. You could stick a sensor on one or more HDDs, the CPU, the chipset. But between cooler-running HDDs and fewer, ascendancy of SSDs, better motherboards with heatsinks as good as the modder would buy to glue permanently to certain mobo components with Arctic Epoxy -- the only essential temperature needed for SIMPLE-but-excellent fan-control is the CPU temperature.
Likely -- the NZXT has no communication with the mobo. You'd be best to get that single sensor (if there is one) installed to the CPU so it measures the greater variability of temperature without attenuation by a heatpipe cooler base.
So -- Yeah! I won't guarantee it, but maybe these cheaper units (as opposed to the Aquaero 5 LT circuit-board for $80) -- could be a bang-for-the-buck choice. Frankly, I never thought about this before I started hankering for USB-connected, onboard-processor equipped fan control.