Unfortunately the only other option is to have 2 AGP slots on the motherboard. Now that gives the problem that 95% of people probably just want one graphics card and one monitor, but the size of an AGP slot would at least remove 1 PCI slot from the motherboard, and also chipset support would be needed, which would cost more.
Then the real problem: what use would it be?!? You'll only play games on one monitor, and therefore the second display adaptor only needs to be able to handle 2D adequately. There are plenty of cheap PCI graphics cards which fit the bill, including the Voodoo3 which also would give you Glide support for old games (and these games are old enough that the V3 is powerful enough to play them perfectly well), and has very nice 2D quality. Matrox cards are best for 2D and are available in PCI versions, so there's no reason for a second AGP slot.