The metal base plate, do I need that if I am going with a heatsink+fan combo like the top of the line Noctua NH-D15 ?
All AM4 motherboards use a metal cooler back-plate. I think a d15 uses it's own anyway so it probably doesn't matter. That's not what I'm talking about though. The gigabyte has a large metal plate that covers most of the back of the board. It adds rigidity to the board and supposedly acts as a heat-sink for the PCB. Not a bad feature but isn't really a necessity.
Is there any tangiable benefit to the shielded PCIe and memory slots? How does dual bios mode help ? How does CMOS clear button help ?
The shielded dim slots MIGHT offer some benefits for RAM overclocks. I can't confirm or poo poo this since I don't own the board but I wouldn't be confident in that. The PCIE slots ad some rigidity to avoid damage to slots when transporting, installing, or removing a heavy GPU. Again not a must have feature. FYI the Tomahawk has its primary PCIE slot armored as well.
Clear CMOS is used to reset the BIOS if you are overclocking and enter a combination of settings that won't post or are extremely unstable. The rear button is really just a convenience. There is a jumper on almost all motherboards these days that can be shorted to accomplish the same thing. This can be a pain if the jumpers are hard to access in a fully assembled build. You can connect your reset button to this jumper as an alternative to shorting the pins with a screwdriver. Depending on how good of access you have to your rear I/O the reset button method may be preferable. Occasionally the CMOS battery may need to be pulled if the jumper or rear button cannot get the settings cleared. Usually holding down the button (or shorting the jumpers) for a while can accomplish the same thing as pulling the battery.
Dual BIOS can be used to keep a backup bios ready to go if your primary one gets corrupted or you wanted access to an alternative bios version without having to flash it. If your bios is corrupted you can usually use bios flash to bring it back so again...it has limited usefulness vs a board that has bios flashback like the tomahawk.