and I think *.* would require an mget or mput as opposed to plain get and put. You could try a GUI, I like gFTP, although I am normally just a command line ftp kind of guy.
To help your situation, if uploading to a Linux/UNIX server, you can probably SSH to it. SCP is file transfer over SSH. Try writing your script using SCP instead. WinSCP should be able to do this, and I *think* can handle folder uploads... I think...
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