Yes sir, the typical motherboard uses a "northbridge" which connects the CPU, memory, AGP bus and southbridge to eachother, and the southbridge handles the I/O stuff like the PCI bus, the IDE controllers, USB controllers, FireWire, floppy controller, COM and parallel ports, and often built-in network and audio too. In
this photo, the two IDE ports that are down low are connected to an add-on IDE controller, so you would want to use those only for hard drives. The ones up higher are the ones hosted by the southbridge itself. The southbridge is the chip below the memory slots which has a gold-tone heatsink on it.