Best practices are always a recommendation. Sadly in most large scale deployments even with budgets in in the ten's of millions, they can't always be implemented effectively.
I have seen perfect fiber runs at deployment only to come back a year later to see someone has balled everything up and jammed it into the copper management conduit.
Still sounds like people issues not tech issues. If you can't keep Joe "high school" Reject, out of your gear then what you describe will happen.