Boston, MA to Tokyo, Japan: 7777 miles 18 hrs 15 min
Delta Air Lines Flight DL993 on a Boeing 757 (jet) in coach class
Departs Boston, MA (BOS) Tue, June 14 6:10a 2 hrs 42 min
Arrives Atlanta, GA (ATL) 8:52a
3 adults in booking code T, covered by fare (A1) below
Layover in Atlanta 1 hr 33 min
Delta Air Lines Flight DL55 on a Boeing 777 (jet) in coach class
(lunch, movie)
Departs Atlanta, GA (ATL) Tue, June 14 10:25a 14 hrs 0 min
Arrives Tokyo, Japan (NRT) Wed, June 15 1:25p
3 adults in booking code T, covered by fare (A1) below
Tokyo, Japan to Boston, MA: 7777 miles 17 hrs 40 min
Delta Air Lines Flight DL56 on a Boeing 777 (jet) in coach class
(dinner, movie)
Departs Tokyo, Japan (NRT) Sun, July 10 3:30p 12 hrs 40 min
Arrives Atlanta, GA (ATL) 3:10p
3 adults in booking code L, covered by fare (A2) below
Layover in Atlanta 2 hrs 25 min
Delta Air Lines Flight DL1066 on a MD-80 (jet) in coach class
Departs Atlanta, GA (ATL) Sun, July 10 5:35p 2 hrs 35 min
Arrives Boston, MA (BOS) 8:10p
3 adults in booking code L, covered by fare (A2) below
Note: The flight from Tokyo (NRT) to Atlanta (ATL) is overnight.
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Booking details
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3 adults fared as:
Fare (A1): DL BOSTYO TXF9 fare NUC 324.50
Fare (A2): DL TYOBOS LLWF8 fare NUC 491.00
Tax: US International Departure Tax $14.10
Tax: US International Arrival Tax $14.10
Tax: Japan International Passenger Facility Charge ¥2040
Tax: US Customs Fee $5.00
Tax: US Immigration Fee $7.00
Tax: USDA APHIS Fee $4.95
Tax: US September 11th Security Fee $7.50
Tax: US Passenger Facility Charge $12.00
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$899.95
x 3 passengers = $2699.85
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Total cost: $2699.85
I don't think you'll do much better than this, mid-June is expensive but still early but mid-July is starting to hit the expensive season (I've paid $1600 for a roundtrip from BOS to Osaka in Aug).