To address your exact question about fsb: remember that Intel talks about fsb for their processors as "quad pumped" so take your system fsb & multiply by four. So "1066 fsb" actually corresponds to a system fsb of 266 and "1333 fsb" is equal to a system fsb of 333.
Now, when you overclock your CPU you do so by increasing the system fsb. Your e8400, for example, is running at 9x400fsb = 3.6GHz. In this overclocked state you are actually using what Intel would refer to as "1600 fsb" in their marketing language.
Same will hold true when you overclock a Q6600. If you set the system fsb to 333 you will be running the CPU at "1333 fsb" with a clockspeed of 3GHz (9x333). With excellent cooling, a solid overclocking motherboard, increased voltage and some luck you could potentially set the Q6600 to "1600 fsb" and run it at the same 3.6GHz as your e8400. But for 24/7 operation that is asking a lot of your setup as the Q6600 generates a lot of heat and will take quite a bump in voltage to run stable at 3.6GHz (if it will at all, which is certainly not guaranteed).
You are likely to see a slight decrease in performance in most games if you get a Q6600 and run at 3-3.2GHz versus your current e8400 @ 3.6GHz. In a few games (those that take advantage of >2 cores, such as SupCom and GTA 4) you will see a nice improvement. If you manage to run your Q6600 at 3.6GHz without burning it up you will see similar performance in most games and somewhat better performance in those that are more heavily multithreaded. But remember also that you are taking a step back in CPU architecture and clock-for-clock
Penryn outperforms Conroe.