The only problem with running a higher frequency on the HT link, is instability caused by a high level of electrical noise through the motherboard tracers.
The tracers are the copper interconnects embedded in the PCB, that provide a data path for the I/O's (Input - Output) of both the chipset and the HT controller on the AMD CPU.
Depending on the quality of the PCB (How many layers it has), and the layout of the tracers, this will denote the boards capability of a frequency higher than 1000Mhz.
the vLDT (HT Voltage) that is used is very low to reduce the effects of electrical noise (aka interference), however, when you increase the operating speed of the HT, more voltage might need to be used to stabilise its operation. But i do agree wit the above comments that a high frequency HyperTransport is not needed, as the bandwidth is just not needed, it would be if you had memory communicating on the HT aswell and needed to compensate for this high use of bandwidth, like the FSB model, but this is not true, as memory on the A64 platform has its on channel in which to communicate. HT is used for the other I/O devices such as AGP/PCI-e, SATA etc
So basically the HyperTransport never gets saturated, with just a single HT link, however, that is different in multiple socket opteron boards which use there HT links to transmit memory data between the different CPU's to share. so this comes in handy in that scenario. But with s939 use there is no benefit, and really no benefit above 600Mhz, i remember a review where they kept reducing the HT frequency until it impeded the system, and i think it was around 400Mhz when there was performance hits from the reduced frequency.