first - try removing jumper and set all HDD settings in bios to auto - see if that detects in post
some SD/CW boards have required a bios update to see the big drives, but you have an add in card that came with the drive, so it must work
this is the chicken and egg situation for a single drive "off board"
the card has it's own bios/drivers
you have to load drivers to have it work
but you have to have it work to load drivers
put it first on a mobo ide port as master with CD slave on same cable, partition C to <32GiG DURING O/S setup (XP max) or with WD floppy or 98 boot disc, (adjust later in drive manager), load O/S, card drivers, then card - make sure card is listed in dev man, then move drive to card and remove jumper completely if alone
Edit:
quote from WDD
Problem:
An EIDE, SCSI, or Serial ATA (SATA) drive is not recognized during the installation of Windows NT/2000/XP. The installer reports that there is no drive present for the Windows installation, even though the controller recognizes the drive.
Cause:
The drive may not be detected during the installation of Windows because you have not yet loaded the drivers for your EIDE, SCSI, or SATA controller.
Resolution:
During the initial installation of Windows, you will need to press F6 almost immediately when "Setup is inspecting your hardware..." appears on the screen. You will then be asked to provide any mass storage controller drivers you may have. At this point, use the drivers supplied by your controller manufacturer. After performing the steps above, the drive will be recognized and the install should continue without problems.
Note: In many cases, specialized ATA or RAID ports, SCSI ports, and SATA ports integrated directly into the motherboard must have their drivers installed as shown above.