well, you say big difference, but really, they are both a chip, they are both channeled through the PCI bus....they both have their own bios... ESSENTIALLY they should be the same.... but again that all depends on WHICH chip, which controller.....
I would say If you need to just plug in extra drives, just get a standalone ATA100 or 133 controller with 2 extra ports for you... you cant use a 2 channel RAID card for more than 2 hdds unless you plan on actually running a RAID array, at least not on my card...
LoRdAccord