Yes. There is two ways to do the dual boot.
1) Install windows on the first drive, then install linux on the second drive
When linux is installed it will install a boot manager which will allow you to select between windows or linux
2) Install windows on the first drive. Disconnect the drive
Install linux on the 2nd drive.
Reconnect the first drive and now use your motherboards boot menu options (usually f8 or f12) to select the drive to boot from
Both has pros and cons, personally I like the 2nd option as it keeps all the boot info for each os separate, and if something screws up with windows or linux, its easier to just disconnect the working ok, and not have to worry about where the boot info is while you are fixing the broken os
While the first option is easier to do