This board is pretty bare bones. It only has a 4 pin CPU, a 3 pin Power fan, and a 3 pin System fan. The bios only has a setting to control the CPU fan.
The ECS fan utility only controls the system fan, and the CPU fan.
Well, I've been there before, and still deal with the limited features of some boards. For instance, Mom's computer upstairs was built with a $90 Gigabyte mATX unit, and probably has similarly limited fan control options.
If you have a problem with either noise or cooling, the solution will be a balance of both. The priority here would be controlling the CPU fan thermally.
If you don't mind in doing some shopping around and spending less than a US Grant on some fans, there are several PWM "splitters" you can buy for less than $10. Maybe you already have some replacement PWM fans.
I'd get the splitter even if you have to live with a mix of 3-pin and PWM (4-pin) fans. And I'd recommend the Swiftech 8W-PWM-SPL-ST.
Here's the way it works. It has its own power cable which likely fits either a Molex or an SATA power plug (thus, "ST"). There is a little plastic plate with eight sets of PWM pins. And there is a 4-pin wire and connection that you'd plug into the CPU PWM-fan port. You then plug whatever PWM fan you want to control AND monitor into the device's "white" port. You can now add an assortment of PWM devices -- fans or water-pumps -- to the other ports on the device. All these devices will be powered directly from the PSU, but controlled from the motherboard CPU PWM fan port.
If you can define a fan "profile" for the CPU fan -port according to temperature, all these fans (or pumps) of any size and amperage will be controlled and varied in speed as a percentage of "duty-cycle." But you can only monitor the first device or fan -- unless you want to make a DIY project of teasing apart the tach wire of other fans so you can connect those tach wires to available vacant fan ports -- of which you apparently have few.
Your problem then becomes that of choosing a mix of PWM and 3-pin fans, the latter which you may not be able to control thermally, or you may have to run them full-bore, except for one other option: a separate fan controller for 3-pin fans. Or you can simply choose your remaining fans by amperage (speed) and size, so they are noiseless at top-end speed.