Setting up a Server to Run "Admixture Application"

beyoku

Golden Member
Aug 20, 2003
1,568
1
71
I am trying to run this software that can be downloaded here:
http://www.genetics.ucla.edu/software/admixture/download.html

To analyse some genetic data as another individual has done here:

http://dienekes.blogspot.com/2010/09/playing-with-admixture.html
here:
http://dienekes.blogspot.com/2010/10/more-detailed-analysis-of-eurasian.html
and here:
http://dienekes.blogspot.com/2010/10/detailed-admixture-analysis-of-west.html

I have a Dell poweredge 2950. Last time a used linux was a while ago on Ubuntu v 5.
I downloaded Ubuntu v10 - installed in on the server, downloaded the "Admixture" program and tried to run it from the directions in the manual with no luck. I am not sure if the file can be run as is, or if it needs to be compiled or what. Can anyone let me know if I should be using a different Lunix distro or if there is a different way to install and run the app and exactly what I should be seeing.

Thanks to anyone that has read this or replied.
 

Crusty

Lifer
Sep 30, 2001
12,684
2
81
I had no issues downloading the gzipped tarball, extracting it, and running the contained executable on Ubuntu 10.04 x64.

Code:
wget http://www.genetics.ucla.edu/software/admixture/binaries/admixture_linux-1.04.tar.gz

tar -zxvf admixture_linux-1.04.tar.gz

cd admixture_linux/ 

./admixture
Code:
****                   ADMIXTURE Version 1.04                   *****
****                    Copyright 2008-2010                     *****
****          David Alexander, John  Novembre, Ken Lange        *****
****                   Please cite our paper!                   *****
****   Information at www.genetics.ucla.edu/software/admixture  *****

Usage: admixture <input file> <K>
See manual for more advanced usage.
 

beyoku

Golden Member
Aug 20, 2003
1,568
1
71
I had no issues downloading the gzipped tarball, extracting it, and running the contained executable on Ubuntu 10.04 x64.

Code:
wget http://www.genetics.ucla.edu/software/admixture/binaries/admixture_linux-1.04.tar.gz

tar -zxvf admixture_linux-1.04.tar.gz

cd admixture_linux/ 

./admixture
Code:
****                   ADMIXTURE Version 1.04                   *****
****                    Copyright 2008-2010                     *****
****          David Alexander, John  Novembre, Ken Lange        *****
****                   Please cite our paper!                   *****
****   Information at www.genetics.ucla.edu/software/admixture  *****

Usage: admixture <input file> <K>
See manual for more advanced usage.

lol I swear I typed that exact same thing and didnt get those results, will try again.

Thanks.