As the previous posters said, this is handled automatically. You can force the drive to inventory all bad sectors and bypass them by performing a sector by sector test. Download the drive manufacturer's drive diagnostic program and perform a FULL (ADVANCED) diagnostic. The diagnostic will either correct the problem or fail the drive. If it fails the drive you'll need to replace it.
Not all bad sectors are physical defects, but keep in mind that if you have real bad sectors - physical damage of the platter caused by a head strike - the drive's days are numbered. In the old days you could suffer dozens of head crashes and just work around the bad sectors with no problems, but not with modern drives.
A head strike will cause debris (particles from the platter) to be released into what should be a particle-free environment. At the rotational speed and close head spacing of modern drives, some of this debris inevitably gets caught between the head and the platter and causes more damage. The process repeats, and repeats. You're essentially using sandpaper on the platters. Pretty soon the drive is worthless and it usually doesn't take long (days).
Backup your data now and if gets any worse replace the drive.
Now, in regards to partitioning for disaster recovery, I do promote the idea of using multiple partitions instead of one large partition. The reason is that a head crash can wipe out your Master File Table (MFT). If this happens you could lose everything on the drive.
By splitting your drive up into smaller partitions you can limit the damage done to the data. Worst case scenario is that a trashed MFT on a multi-partition drive will only lose the data in one partition.
I go into greater details of the benefits of multiple partitions here:
http://penguinblog.com/partitioning.shtml
Hope this helps...