As much as I like the Wankel for being different, it just wasn't ever really meant to last in today's world. The emissions were worse than Otto-cycle engines (even with all the improvements Mazda made with side ports and the like) and the fuel economy was much worse than Otto-cycle engines of comparable power. The Wankel's advantages of lighter weight and smaller physical size just can't outweigh the efficiency advantages of the Otto-cycle engine given the priorities necessary today.
It's still sad to see it go, but in its current forms it just didn't make sense in a modern mass production car and its days have been numbered for some time now.
ZV