Regs I know what you are trying to say but I just feel you don't have a good understanding of how it works. Your bios are cannot be changed, unless you are flashing them there is absolutely no way to change the bios (with a few exceptions). Now within the bios there is a program to change certain settings that help define what hardware you have in your computer. Now these settings are not saved in the bios (becasue they cannot be), but they are saved in the CMOS. and the CMOS is volatile memory IE if you remove the power it loses what was stored there (this is how the clear CMOS jumper works it removes the power connection to the CMOS and finishes a circuit so the memory can discharge). the point of dual bios is to protect against a bad flash or a virus the kills the bios, which is totally different from his situation. in that case something has to address the flash rom in a specific way to overwrite it...
Josh
Edit: Now Regs, i am not sure how the dual bios is implemented and it could be different from one manufacturer to another but i would guess that by default restoring the bios from the secondary chip would reset the CMOS, thereby fixing the problem. However, that is a side effect but not that actual process, clearing the CMOS is a much simpler and less troubleful process. Dual bios just isn't the answer to a problem like this because there is no problem with the bios being there. (altho there may be a flaw in the bios that doesn't go back to the agp after it doesn't find a pci card tho... which it should)