Problem with System Commander 2000

[Dogbert]

OS setup (Alt-O) in the System Commander 2000 program is having a problem during the analysis of my computer. In the middle of analyzing, a dialog box comes up, saying "An improper Windows 95 shutdown was detected. Run a diagnostic/correction program such as Norton Utilities Disk Doctor to see if it can correct the problem, then try again."
What could the problem be?

I have win98SE installed on my 30.7 GB hard drive, which currently has only one partition.
There are no obvious problems during startup or shutdown. I did a fresh install of win98 less than two months ago and it has been running great.

I'm using System Commander 2000 because I want to eventually multiboot after adding win2k and linux.
Any recommendations on alternative boot managers if I can't get SysCommander to work?

Thanks in advance.

 

[Technonut]

There is BootMagic. It always worked well for me when I used it.

http://www.powerquest.com/bootmagic/index.html

 

[Dogbertatwork]

I found a possible solution:

http://www.v-com.com/support/techfaqs_all/oswiz_winerr.html

I can't recall what the setting is currently, but I'll set it to zero and see if that fixes the error.
I should've checked the website first and not just looked at the manual. 😱