I have always run the power wire (usually 4 guage - multiple amp setup) directly to the battery. Then off of the deck you install the RCA's and the remote wire. The remote wire sends a signal to the amp to power it on when the deck is running. In my experience the remote wire (on Pioneer decks) has always been blue. Then just ground the amp out in the trunk somewhere.
I have never spliced a wire from the deck to bring 12v of power to the amp.