IIRC there WAS supposed to be a standard in place for BTX so the ATX standard was never "ratified" if you will. Since BTX pretty much tanked in everything except OEMs, we're sitting with pin sized crap to deal with still.
Oh and it was the pins on upside down. What was weird was power/reset worked fine.
On that note, yes, the LEDs are WAY to bright. Why do I want to see it coming out of the side of my case? and why put the HDD LED behind the door? How can they design such a nice case, then go and do that?