Dunno. I've never played network admin on a big network, but I've never seen any issues created by jumbo frames. That of course doesn't mean it can't happen.
Most of the time if you need a boat load of bandwidth, on anything BUT a really big network, it is because you are accessing storage, which means that 3-4% boost isn't necessarily a pointless gain or a rare gain either for that matter.
By the time you are looking at jumbo frames on LAN segment (before being laughed out of the room by your peers) you would be looking adding LAG groups or upgrading to 10gb, something that infinitely better supported.
The key thing with jumbo frames is *everything* on the segment has to support it.
Wireless AP? Ut oh!
That $49 HP printer? Ut oh!
PS3, PS4, Xbox, XBone? Ut oh!
SIP phone on your desk?
That network attached home alarm system?
Smart TV..
Any wireless devices?
The Internet? Ut oh!
Sure things can be fragmented at a router, except that you run in to "Do not fragment" on WAN paths etc.
All that jumbo frames net you less CPU interrupts and processing (good if you have a gutless NAS) but anything with TCP/IP offload engines will only net you the 4% protocol improvement and that is only with 100% utilization. Even if you get everything working with a 9000 MTU, you will only be able to get that 4% on your local LAN. Once that PS3 is streaming Netflix, you have a stream of 1500 mtu frames running around. Same with wireless devices etc.
The issues are the same with an Enterprise network. No one is going waste time configuring 1022 devices in a /22 for jumbo frames, verify that all 1022 devices can even support jumbo frame correctly and then deal with a packet fragmentation mess at the VPN / WAN when they can throw another $5 Ethernet cable in to the LAG group.
I'm not saying that the concept of Jumbo frames is bad. We use it all the time in our dedicated WAN for encapsulating crap to prevent fragmentation. It however is rarely if never worth it for the "desktop edge."