As your using SetiDriver, with the CLI, this is not tied to any particular directory, registry values etc.
This means that you can just stop the client, move the entire directory to another drive/computer, do your formatting, then copy it back once done, and it won't know that anything's happened
If you do want to burn it to a CDR, make sure you zip up all the files (and set it to remember directory structure), then that way when you copy it back, all the files won't be set with "Read Only" attribute
Confused