Well, it is a combination of both really. If you have PnP enabled on your mobo, then all system resources would be configured by the BIOS, so in both OSes you would have the same system resource configuration. But if you have PnP disabled on your mobo, then Windows 98 and Windows 2000 have a different PnP manager. So, then you would have different systems resources. This should not effect anthing on your system.