Because it makes them modular, the manufacturer just builds an amp with a hole the size of the pre-made amp.
I'm not too up on my high-end subs, so I assumed better ones would have different amps, but maybe I'm wrong. Like I said, a lot of really cheap subs have no crossover built in (or maybe a fixed one), and I found the shakers terribly distracting without a crossover set to 50-60hz. Since the crossover on my system is more like 80-90hz, which is the usual setting f you have decent bookshelf speakers, I needed another one. Otherwise every time Morgan Freeman talks, I feel it in my ass, and really, he's a little old to be doing that to me.
My shakers are little Aura units, and don't need (or even accept) much power; I think 25 or 50 watts each.
Now that I see the system the OP is talking about, he needs a bigger amp than what a cheap sub is going to have.