here's the deal,
first of all, unless you have a monster of a case, you are way past overkill with the 6x120mm case fans. There's no way with that many fans you can have optimal air flow. A bunch of fans in a case blowing air in and out can do very little unless setup correctly. i wont babble about efficient case cooling, you can find plenty of that online, but as far as your power question goes... yes, every single molex on a system gets the same amount of power. here's a brief explaination:
Power (in watts) is the product of Voltage (in Volts) and Current (in Amps). In other words, P=VI, where I = current. Since the voltage used for these devices is uniform, what you really mean to ask is "Do they give off the same amount of current." On your power supply you should see a chart that details these specs. Each molex connector has 3 wires running into it: a -12v wire, a -5v wire, a 5v wire, and a 12v wire. Your power supply is rated to supply a maximum current on each of these channels, regardless of which set of wires you are using. If you have a maximum of 60A for your 5v source (i can't remember what modern PSUs usually provide), that means that the sum of the current being used by all the devices in your machine on the 5v channel cannot exceed 60A. If you try to use 70A of current, and your power supply can only provide you with 60A of current, you'll start running into system instability or an all out lack of functionality.
I dont think i did a great job answering your question there, so let me explain this in clearer terms should that not make sense: Say you have a power supply that can provide 80A on your 5v channel. Coming out of your power supply you have 4 molex connectors. What this means is that the current being drawn from the 5v channel for all the devices added together cannot exceed 80A. This does not mean that each molex connector can supply 20A, making a total of 80A. One channel could supply 50A, and the others 10A each. It all depends on how you use it. All you have to do is make sure that the total current being used throughout your whole machine for that channel does not exceed the rating. It doesn't matter what channel you plug them into.
Now, with that said, I'll explain why it actually does matter what channel you plug them into. You want to provide a certain voltage to each device. Like I said above, there are 4 voltages available: -12v, -5v, 5v, 12v. If you have 24 devices all connected to the same molex connector in a string, as in the following crappy diagram, you could run into a problem with resistance.
PSU ---Molex # 1-------- HDD ------------- HDD --------- HDD -------- HDD ---------- CDROM -------- Too many fans -------- etc...
In other words, the resistance of the 24 devices, each of which is minimal and insignificant alone, could add up to be so great that by the time you get to device #24 in the chain, you have 4.5v instead of 5v. Modern power supplies are switching power supplies - meaning that they automatically adjust for this, but if the current is already overloaded you will have a problem providing the correct voltage.
I'm pretty sure all that is accurate, but i'm just a freshman ECE major so i'm not 100% sure. I could be a little off on the resistance part, but I know that as long as you stay reasonable w/ the # of devices on 1 molex, and stay within the maximum current per channel as specified by the PSU label or spec sheet, you should be OK.
Hope I helped,
Joe
Theoretically, you can hook up an infinite number of devices on an infinite number of molex connectors provided your power supply can give off an infinite amount of power and your devices all have 0 resistance.