Oh, I see
No I dont think so. I dont have any experience with the Alpha PAL 8045 though, so you should seek another opinion on what I am about to say.
You are OK to just put a HSF onto a chip, however it is always nice to clean up the base of the HSF first - surgical spirit is good for this (there are others, basically alcohol (ethanol))
By no means do you have to lap a heatsink before you use it, i mean have a look at the retail HSFs that come with chips - do they look shiny as if they have been lapped to you?

Therefore if the stock sink does it's job, then you'll be fine without lapping the sink. Of course, no one is stopping you
Personally, I wouldnt bother, just clean up all the old thermal pad / paste before you install the new HSF. - What are you going to use in that dept. btw? Thermal paste? a pad? Arctic silver?
Hope this helps.
BTW: You probably know this, but remember you'll have to take your motherboard out to install the 8045...