512B sector emulation will be with us for a long time. While it takes digging to find out how, sometimes, most drives today can still be made to work on systems with MB- and GB-level limits.
What newer OSes give us is boot-time detection, and partition tool support, so that the emulation can be entirely ignored. Do we use ATA's PIO modes for our 6Gbps SSD? Of course not. But, there is hardware/software out there that may need to.
The emulation layer existing is a good thing, because old software doesn't die out like we might like it to. With OSes and their tools being updated, we can safely say, "just do a clean Windows 8 install," for AF HDDs, just like with SSDs, and not worry about it, beyond that.