Sure, giving up on the 1600MHz/8-8-8-24 settings isn't going to cause a bloody puppy massacre, but if it was me, I'd OCD the hell out of the BIOS and damn well get it to work.
So, if you're willing to give it another go, here's how I think you should go about it:
1: Get some known working settings. (i.e. get to the point where AUTO settings are fully functional in windows. -- I believe you have this for 1333MHz/9-9-9-24. with who-knows-how-much voltage -- I assume those are on AUTO withal.)
2: Figure out what precisely AUTO is setting stuff to. (The current settings should be visible somewhere in the BIOS, at least they usually are on the Gigabyte boards I've been using of late) Or install AMD Overdrive and pore over that status tab. It'll give you all the voltage and DRAM timing information you'll ever need, with extra for good measure.)
3: Get into the BIOS and enter those known working settings manually. If it was me I'd just enter the main memory timings at first and pretty much leave sub-timings on AUTO, because there's a whole lot I don't really understand about DRAM, and AUTO is practically always better than I at setting proper sub-timings.
#1-2-3 TLDR: manually set the 1333MHz/9-9-9-24 parameters, set DRAM voltage to 1.65V
4: Cross fingers, save settings and restart. If this doesn't work, you may need to figure out the BIOS menu some more. It's been years since I've played around with an MSI motherboard, but that board was a pleasure and they're a top manufacturer so I'm not quite willing to believe that yours is incapable of these basic things. Nor would I readily accept that a Thuban IMC cannot run 2 4GB sticks @1600MHz. So user error is all that's really left me...
5: Once you've got 1333MHz/9-9-9-24 dialled in, it should simply be a matter of upping the memory divisor, and then tightening the timings. I do realize that this is sometimes easier said than done, but... If it was me I'd set 1600MHz at first, leaving the slacker timings for the time being. And only after another restart/test/shutdown would I tighten the timings.
6: Should speeding up either the frequency or timings fail, I would then increase DRAM voltage 0.05V at a time. Up to a maximum of 1.75V. If then faced with a still stubbornly crashing machine, I would lower memory voltage back to stock and go about increasing CPU-NB and NB voltages a little bit. (of course, if those are still on AUTO at this point, which they well might be, you'd need to check what the known functional AUTO setting amounts to before increasing them both slightly.) Of course, if that too failed, I'd try setting all three voltages higher than stock simultaneously. Even though it seems to me that getting two sticks of 1600 to run 8-8-8 on a Thuban should require no increases of voltages, but I digress.
7: If that fails (which I suppose it well could, given that all the advice I've given you is painfully generic) you could try opening a ticket with Corsair technical support. Having no first hand experience with their products (I usually purchase OCZ memory, and have always been impressed with their technical support forum) so I can't say this from personal experience but I've gotten the impression that Corsair is a truly first rate operation, quite on par with OCZ (some might even say better), and there's probably someone there with actual experience with both AMD hex-cores and your particular memory who could help.