I have basically the same setup on my system, except instead of 2000, I have ME. I think as long as you have one as a master, and one as slave, you're fine. I didn't have to toy around with anything in order to get a dual boot menu on my system on startup.
Hope this helps.
<< I have two hard drives for my computer, one has winxp and the other has win2k.
Is there a way I can configure my ide channels to dual boot?
Thx >>